OSError: [Errno 2] No such file or directory

Atomate
1

Dear All,

When I ran the test workflow on https://hackingmaterials.github.io/atomate/installation.html#introduction, my job is fizzled. I checked FW_job-516787.error and found the error below

Traceback (most recent call last):

File “/gpfs0/shared/apps/util/easybuild/software/FireWorks/1.4.3-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/FireWorks-1.4.3-py2.7.egg/fireworks/core/rocket.py”, line 230, in run

m_action = t.run_task(my_spec)

File “/opt/apps/util/easybuild/software/atomate/0.4.5-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/atomate-0.4.5-py2.7.egg/atomate/vasp/firetasks/run_calc.py”, line 185, in run_task

c.run()

File “/gpfs0/shared/apps/util/easybuild/software/custodian/1.1.0-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/custodian-1.1.0-py2.7.egg/custodian/custodian.py”, line 313, in run

self._run_job(job_n, job)

File “/gpfs0/shared/apps/util/easybuild/software/custodian/1.1.0-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/custodian-1.1.0-py2.7.egg/custodian/custodian.py”, line 362, in _run_job

p = job.run()

File “/gpfs0/shared/apps/util/easybuild/software/custodian/1.1.0-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/custodian-1.1.0-py2.7.egg/custodian/vasp/jobs.py”, line 198, in run

p = subprocess.Popen(cmd, stdout=f_std, stderr=f_err)

File “/opt/apps/util/easybuild/software/Python/2.7.13-intel-2017a/lib/python2.7/subprocess.py”, line 390, in init

errread, errwrite)

File “/opt/apps/util/easybuild/software/Python/2.7.13-intel-2017a/lib/python2.7/subprocess.py”, line 1024, in _execute_child

raise child_exception

OSError: [Errno 2] No such file or directory

INFO:rocket.launcher:Rocket finished

Anybody has ideas on this error?

Thanks in advance!

Best regards,

Yang Tong

2

Hi Yang

1 - please check the font size on your help requests, it is difficult to read such large font

2 - most likely, your “vasp_cmd” is not set correctly. Please check your my_fworker.yaml file here: https://hackingmaterials.github.io/atomate/installation.html#my-fworker-yaml

and also make sure that you can run that command on the computer where you are executing your workflows

If you still have issues, please email the list again and include some more details such as:

  • where are you running the job

  • what does your my_fworker.yaml look like

  • the full contents of the the Firework you are trying to run. You can get this using “lpad get_fws -i <FW_ID> -d all”.

Anubhav

···

On Saturday, February 10, 2018 at 5:03:47 AM UTC-8, Tong Yang wrote:

Dear All,

When I ran the test workflow on https://hackingmaterials.github.io/atomate/installation.html#introduction, my job is fizzled. I checked FW_job-516787.error and found the error below

Traceback (most recent call last):

File “/gpfs0/shared/apps/util/easybuild/software/FireWorks/1.4.3-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/FireWorks-1.4.3-py2.7.egg/fireworks/core/rocket.py”, line 230, in run

m_action = t.run_task(my_spec)

File “/opt/apps/util/easybuild/software/atomate/0.4.5-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/atomate-0.4.5-py2.7.egg/atomate/vasp/firetasks/run_calc.py”, line 185, in run_task

c.run()

File “/gpfs0/shared/apps/util/easybuild/software/custodian/1.1.0-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/custodian-1.1.0-py2.7.egg/custodian/custodian.py”, line 313, in run

self._run_job(job_n, job)

File “/gpfs0/shared/apps/util/easybuild/software/custodian/1.1.0-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/custodian-1.1.0-py2.7.egg/custodian/custodian.py”, line 362, in _run_job

p = job.run()

File “/gpfs0/shared/apps/util/easybuild/software/custodian/1.1.0-intel-2017a-Python-2.7.13/lib/python2.7/site-packages/custodian-1.1.0-py2.7.egg/custodian/vasp/jobs.py”, line 198, in run

p = subprocess.Popen(cmd, stdout=f_std, stderr=f_err)

File “/opt/apps/util/easybuild/software/Python/2.7.13-intel-2017a/lib/python2.7/subprocess.py”, line 390, in init

errread, errwrite)

File “/opt/apps/util/easybuild/software/Python/2.7.13-intel-2017a/lib/python2.7/subprocess.py”, line 1024, in _execute_child

raise child_exception

OSError: [Errno 2] No such file or directory

INFO:rocket.launcher:Rocket finished

Anybody has ideas on this error?

Thanks in advance!

Best regards,

Yang Tong